PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g18130.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 124aa    MW: 13965.9 Da    PI: 9.8042
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g18130.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.82.2e-271491059
     ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                    lkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve 
  Vang11g18130.2  1 LKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 49
                    69*******************9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.5E-24147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-27147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.71146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-22150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.41E-2046115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-3146116IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-2854110IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
LKNHAAAMGG NATDGCGEFM PSGEEGTIEA LNCSACHCHR NFHRKEVEGE PSSKKRFRTK  60
FTQEQKEKML NFAERVGWKI QKQEESVVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKNPPT  120
AAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-25541121775ZF-HD homeobox family protein
1wh7_A2e-25531121675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-115AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069129.13e-67PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9SB617e-49ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM0RH781e-67M0RH78_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P11020_0013e-67(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-50homeobox protein 22