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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g18130.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 124aa MW: 13965.9 Da PI: 9.8042 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.8 | 2.2e-27 | 1 | 49 | 10 | 59 |
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 lkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve Vang11g18130.2 1 LKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 49 69*******************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.5E-24 | 1 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-27 | 1 | 47 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.71 | 1 | 46 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 1 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.41E-20 | 46 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-31 | 46 | 116 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.5E-28 | 54 | 110 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
LKNHAAAMGG NATDGCGEFM PSGEEGTIEA LNCSACHCHR NFHRKEVEGE PSSKKRFRTK 60 FTQEQKEKML NFAERVGWKI QKQEESVVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKNPPT 120 AAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-25 | 54 | 112 | 17 | 75 | ZF-HD homeobox family protein |
1wh7_A | 2e-25 | 53 | 112 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-115 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069129.1 | 3e-67 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9SB61 | 7e-49 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | M0RH78 | 1e-67 | M0RH78_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P11020_001 | 3e-67 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-50 | homeobox protein 22 |